Wait, so Qui-Gon's team of literal ninjas who fight for good (???) decided that Gotham ( a city ) was too stinky and evil to live so they tried to destroy it, but Batman's billionaire father stopped them by being nice?
So they learn that Batman's father's kid is in prison in China where he is fighting all the time to learn to fight better and be tough, so they go recruit him, right?
But Qui-Gon and Batman fight because Batman didn't want to kill some small time crook, so they burn down the ninja castle (???) and it turns out that Qui-Gon was paying some old guy to just sit there and silently pretend to be the boss?

So then the ninja organization figures out that Bruce Wayne is Batman and they come to fuck up Gotham again with fear gas, right?
But Batman kills Qui-Gon so the ninjas just give up and go home?
And then Bane takes over the remaining ninjas, but because he's crazy and evil, they become special forces guys with machine guns and just come back to fuck up Gotham again?